Detailed information of SNP:
|
SNP ID:
sf0122032437(Gbrowse)
Chromosome: chr01 Position: 22032437 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.57% | 41.43% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122032437 | A->G | LOC_Os01g39136(LOC_Os01g39136.1) | UTR_5_PRIME |