Detailed information of SNP:
|
SNP ID:
sf0122036937(Gbrowse)
Chromosome: chr01 Position: 22036937 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1300 | 96.85% | 3.15% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 387 | 90.18% | 9.82% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 266 | 86.84% | 13.16% |
| Tropical Japonica | 72 | 100.00% | 0.00% |
| Japonica Intermediate | 49 | 93.88% | 6.12% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122036937 | T->A | INTERGENIC | None |