Detailed information of SNP:
|
SNP ID:
sf0122079478(Gbrowse)
Chromosome: chr01 Position: 22079478 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.91% | 10.09% |
| All Indica | 797 | 85.70% | 14.30% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122079478 | C->T | INTERGENIC | None |