Detailed information of SNP:
|
SNP ID:
sf0122080007(Gbrowse)
Chromosome: chr01 Position: 22080007 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 55.52% | 44.48% |
| All Indica | 796 | 23.37% | 76.63% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 6.15% | 93.85% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122080007 | G->A | INTERGENIC | None |