Detailed information of SNP:
|
SNP ID:
sf0122086879(Gbrowse)
Chromosome: chr01 Position: 22086879 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 58.24% | 41.76% |
| All Indica | 783 | 97.70% | 2.30% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122086879 | C->G | LOC_Os01g39260(LOC_Os01g39260.1) | UTR_3_PRIME |