Detailed information of SNP:
|
SNP ID:
sf0122120015(Gbrowse)
Chromosome: chr01 Position: 22120015 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.56% | 41.44% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122120015 | C->T | LOC_Os01g39310(LOC_Os01g39310.3) | INTRON |
| sf0122120015 | C->T | LOC_Os01g39310(LOC_Os01g39310.1) | INTRON |