Detailed information of SNP:
|
SNP ID:
sf0122124625(Gbrowse)
Chromosome: chr01 Position: 22124625 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.32% | 41.68% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122124625 | A->C | LOC_Os01g39310(LOC_Os01g39310.3) | Non-Synonymous SNP |
| sf0122124625 | A->C | LOC_Os01g39310(LOC_Os01g39310.1) | Non-Synonymous SNP |