Detailed information of SNP:
|
SNP ID:
sf0122144740(Gbrowse)
Chromosome: chr01 Position: 22144740 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 97.08% | 2.92% |
| All Indica | 791 | 99.87% | 0.13% |
| All Japonica | 433 | 91.45% | 8.55% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 87.54% | 12.46% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 96.61% | 3.39% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122144740 | C->G | INTERGENIC | None |