Detailed information of SNP:



SNP ID: sf0122148373(Gbrowse)

Chromosome: chr01

Position: 22148373
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1413 95.26% 4.74%
All Indica796 94.72% 5.28%
All Japonica497 100.00% 0.00%
Aus64 65.62% 34.38%
Indica I375 99.47% 0.53%
Indica II210 82.86% 17.14%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0122148373 C->T INTERGENIC None