Detailed information of SNP:
|
SNP ID:
sf0122148381(Gbrowse)
Chromosome: chr01 Position: 22148381 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.19% | 4.81% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 63.49% | 36.51% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122148381 | C->T | INTERGENIC | None |