Detailed information of SNP:
|
SNP ID:
sf0122154828(Gbrowse)
Chromosome: chr01 Position: 22154828 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1271 | 77.58% | 22.42% |
| All Indica | 663 | 70.74% | 29.26% |
| All Japonica | 496 | 84.27% | 15.73% |
| Aus | 61 | 81.97% | 18.03% |
| Indica I | 312 | 72.44% | 27.56% |
| Indica II | 179 | 66.48% | 33.52% |
| Indica Intermediate | 172 | 72.09% | 27.91% |
| Temperate Japonica | 334 | 79.94% | 20.06% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122154828 | A->G | LOC_Os01g39370(LOC_Os01g39370.1) | INTRON |