Detailed information of SNP:
|
SNP ID:
sf0122175260(Gbrowse)
Chromosome: chr01 Position: 22175260 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 98.17% | 1.83% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122175260 | A->T | LOC_Os01g39380(LOC_Os01g39380.2) | INTRON |
| sf0122175260 | A->T | LOC_Os01g39380(LOC_Os01g39380.3) | INTRON |
| sf0122175260 | A->T | LOC_Os01g39380(LOC_Os01g39380.1) | INTRON |