Detailed information of SNP:
|
SNP ID:
sf0122177253(Gbrowse)
Chromosome: chr01 Position: 22177253 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.08% | 42.92% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122177253 | T->A | LOC_Os01g39380(LOC_Os01g39380.2) | Non-Synonymous SNP |
| sf0122177253 | T->A | LOC_Os01g39380(LOC_Os01g39380.3) | Non-Synonymous SNP |
| sf0122177253 | T->A | LOC_Os01g39380(LOC_Os01g39380.1) | Non-Synonymous SNP |