Detailed information of SNP:
|
SNP ID:
sf0122194562(Gbrowse)
Chromosome: chr01 Position: 22194562 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1274 | 51.33% | 48.67% |
| All Indica | 666 | 90.84% | 9.16% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 64 | 53.12% | 46.88% |
| Indica I | 286 | 98.60% | 1.40% |
| Indica II | 205 | 85.85% | 14.15% |
| Indica Intermediate | 175 | 84.00% | 16.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 33 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122194562 | T->C | LOC_Os01g39385(LOC_Os01g39385.1) | UTR_5_PRIME |