Detailed information of SNP:
|
SNP ID:
sf0122198374(Gbrowse)
Chromosome: chr01 Position: 22198374 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1257 | 97.14% | 2.86% |
| All Indica | 642 | 94.39% | 5.61% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 266 | 87.59% | 12.41% |
| Indica II | 180 | 99.44% | 0.56% |
| Indica Intermediate | 196 | 98.98% | 1.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122198374 | G->A | INTERGENIC | None |