Detailed information of SNP:



SNP ID: sf0122204399(Gbrowse)

Chromosome: chr01

Position: 22204399
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 95.98% 4.02%
All Indica799 99.75% 0.25%
All Japonica497 90.14% 9.86%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 54.26% 45.74%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0122204399 G->T INTERGENIC None