Detailed information of SNP:
|
SNP ID:
sf0122206767(Gbrowse)
Chromosome: chr01 Position: 22206767 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 59.90% | 40.10% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 482 | 5.60% | 94.40% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 326 | 5.83% | 94.17% |
| Tropical Japonica | 89 | 2.25% | 97.75% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122206767 | A->C | LOC_Os01g39399(LOC_Os01g39399.1) | INTRON |