Detailed information of SNP:
|
SNP ID:
sf0122254729(Gbrowse)
Chromosome: chr01 Position: 22254729 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.05% | 41.95% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 495 | 2.63% | 97.37% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122254729 | T->C | LOC_Os01g39490(LOC_Os01g39490.1) | Non-Synonymous SNP |