Detailed information of SNP:
|
SNP ID:
sf0122321239(Gbrowse)
Chromosome: chr01 Position: 22321239 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 65.44% | 34.56% |
| All Indica | 797 | 94.73% | 5.27% |
| All Japonica | 391 | 3.32% | 96.68% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 250 | 4.00% | 96.00% |
| Tropical Japonica | 82 | 2.44% | 97.56% |
| Japonica Intermediate | 59 | 1.69% | 98.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122321239 | T->C | LOC_Os01g39580(LOC_Os01g39580.1) | INTRON |