Detailed information of SNP:
|
SNP ID:
sf0122330103(Gbrowse)
Chromosome: chr01 Position: 22330103 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 59.25% | 40.75% |
| All Indica | 795 | 93.71% | 6.29% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122330103 | T->G | INTERGENIC | None |