Detailed information of SNP:
|
SNP ID:
sf0122331389(Gbrowse)
Chromosome: chr01 Position: 22331389 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 54.12% | 45.88% |
| All Indica | 784 | 21.56% | 78.44% |
| All Japonica | 477 | 99.58% | 0.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 2.67% | 97.33% |
| Indica II | 208 | 37.02% | 62.98% |
| Indica Intermediate | 201 | 40.80% | 59.20% |
| Temperate Japonica | 325 | 99.69% | 0.31% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 3 | 33.33% | 66.67% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122331389 | C->T | INTERGENIC | None |