Detailed information of SNP:
|
SNP ID:
sf0122335925(Gbrowse)
Chromosome: chr01 Position: 22335925 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 95.95% | 4.05% |
| All Indica | 793 | 94.70% | 5.30% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 82.78% | 17.22% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122335925 | T->G | INTERGENIC | None |