Detailed information of SNP:
|
SNP ID:
sf0122344227(Gbrowse)
Chromosome: chr01 Position: 22344227 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.71% | 44.29% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122344227 | A->T | INTERGENIC | None |