Detailed information of SNP:
|
SNP ID:
sf0122376228(Gbrowse)
Chromosome: chr01 Position: 22376228 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.23% | 44.77% |
| All Indica | 798 | 25.31% | 74.69% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 5.08% | 94.92% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122376228 | A->G | LOC_Os01g39670(LOC_Os01g39670.1) | Non-Synonymous SNP |