Detailed information of SNP:
|
SNP ID:
sf0122376317(Gbrowse)
Chromosome: chr01 Position: 22376317 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.27% | 44.73% |
| All Indica | 796 | 25.25% | 74.75% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 4.81% | 95.19% |
| Indica II | 212 | 41.98% | 58.02% |
| Indica Intermediate | 210 | 44.76% | 55.24% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122376317 | A->C | LOC_Os01g39670(LOC_Os01g39670.1) | UTR_3_PRIME |