Detailed information of SNP:
|
SNP ID:
sf0122380414(Gbrowse)
Chromosome: chr01 Position: 22380414 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 93.58% | 6.42% |
| All Indica | 797 | 88.83% | 11.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122380414 | T->C | LOC_Os01g39680(LOC_Os01g39680.3) | INTRON |
| sf0122380414 | T->C | LOC_Os01g39680(LOC_Os01g39680.1) | INTRON |
| sf0122380414 | T->C | LOC_Os01g39680(LOC_Os01g39680.2) | INTRON |