Detailed information of SNP:
|
SNP ID:
sf0122397237(Gbrowse)
Chromosome: chr01 Position: 22397237 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.33% | 43.67% |
| All Indica | 795 | 27.04% | 72.96% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 5.35% | 94.65% |
| Indica II | 211 | 47.87% | 52.13% |
| Indica Intermediate | 210 | 44.76% | 55.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122397237 | C->T | INTERGENIC | None |