Detailed information of SNP:
|
SNP ID:
sf0122401194(Gbrowse)
Chromosome: chr01 Position: 22401194 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.88% | 49.12% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122401194 | T->C | LOC_Os01g39720(LOC_Os01g39720.1) | INTRON |