Detailed information of SNP:
|
SNP ID:
sf0122401922(Gbrowse)
Chromosome: chr01 Position: 22401922 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.12% | 44.88% |
| All Indica | 798 | 21.93% | 78.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 6.15% | 93.85% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122401922 | G->A | LOC_Os01g39720(LOC_Os01g39720.1) | INTRON |