Detailed information of SNP:
|
SNP ID:
sf0122402721(Gbrowse)
Chromosome: chr01 Position: 22402721 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 94.57% | 5.43% |
| All Indica | 727 | 90.10% | 9.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 158 | 91.77% | 8.23% |
| Indica Intermediate | 198 | 74.75% | 25.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122402721 | C->T | LOC_Os01g39720(LOC_Os01g39720.1) | INTRON |