Detailed information of SNP:
|
SNP ID:
sf0122404248(Gbrowse)
Chromosome: chr01 Position: 22404248 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 56.68% | 43.32% |
| All Indica | 789 | 27.63% | 72.37% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 369 | 6.23% | 93.77% |
| Indica II | 211 | 47.87% | 52.13% |
| Indica Intermediate | 209 | 44.98% | 55.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122404248 | C->T | LOC_Os01g39730(LOC_Os01g39730.1) | Synonymous |