Detailed information of SNP:
|
SNP ID:
sf0122406784(Gbrowse)
Chromosome: chr01 Position: 22406784 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.44% | 17.56% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122406784 | G->A | INTERGENIC | None |