Detailed information of SNP:
|
SNP ID:
sf0122409963(Gbrowse)
Chromosome: chr01 Position: 22409963 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 93.91% | 6.09% |
| All Indica | 792 | 89.77% | 10.23% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 211 | 72.99% | 27.01% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122409963 | A->G | LOC_Os01g39740(LOC_Os01g39740.1) | Synonymous |