Detailed information of SNP:
SNP ID:
sf0122430879(Gbrowse)
Chromosome: chr01 Position: 22430879 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1409 | 94.96% | 5.04% |
All Indica | 790 | 91.39% | 8.61% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 98.66% | 1.34% |
Indica II | 206 | 74.76% | 25.24% |
Indica Intermediate | 210 | 94.76% | 5.24% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0122430879 | A->G | INTERGENIC | None |