Detailed information of SNP:
|
SNP ID:
sf0122440611(Gbrowse)
Chromosome: chr01 Position: 22440611 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.64% | 49.36% |
| All Indica | 796 | 76.38% | 23.62% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122440611 | T->C | LOC_Os01g39790(LOC_Os01g39790.1) | INTRON |
| sf0122440611 | T->C | LOC_Os01g39790(LOC_Os01g39790.2) | UTR_5_PRIME |