Detailed information of SNP:
|
SNP ID:
sf0122440749(Gbrowse)
Chromosome: chr01 Position: 22440749 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.71% | 49.29% |
| All Indica | 796 | 76.51% | 23.49% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122440749 | C->T | LOC_Os01g39790(LOC_Os01g39790.1) | Non-Synonymous SNP |
| sf0122440749 | C->T | LOC_Os01g39790(LOC_Os01g39790.2) | UTR_5_PRIME |