Detailed information of SNP:
|
SNP ID:
sf0122450217(Gbrowse)
Chromosome: chr01 Position: 22450217 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.71% | 5.29% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122450217 | T->A | LOC_Os01g39810(LOC_Os01g39810.1) | INTRON |
| sf0122450217 | T->A | LOC_Os01g39810(LOC_Os01g39810.4) | INTRON |
| sf0122450217 | T->A | LOC_Os01g39810(LOC_Os01g39810.2) | INTRON |
| sf0122450217 | T->A | LOC_Os01g39810(LOC_Os01g39810.3) | INTRON |