Detailed information of SNP:
|
SNP ID:
sf0122455611(Gbrowse)
Chromosome: chr01 Position: 22455611 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 54.55% | 45.45% |
| All Indica | 794 | 31.74% | 68.26% |
| All Japonica | 490 | 84.90% | 15.10% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 10.70% | 89.30% |
| Indica II | 211 | 44.55% | 55.45% |
| Indica Intermediate | 209 | 56.46% | 43.54% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 90 | 31.11% | 68.89% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122455611 | C->T | INTERGENIC | None |