Detailed information of SNP:
|
SNP ID:
sf0122459203(Gbrowse)
Chromosome: chr01 Position: 22459203 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 91.22% | 8.78% |
| All Indica | 796 | 96.98% | 3.02% |
| All Japonica | 493 | 82.56% | 17.44% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 90 | 21.11% | 78.89% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122459203 | C->G | INTERGENIC | None |