Detailed information of SNP:
|
SNP ID:
sf0122468295(Gbrowse)
Chromosome: chr01 Position: 22468295 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1274 | 91.13% | 8.87% |
| All Indica | 656 | 83.08% | 16.92% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 267 | 93.63% | 6.37% |
| Indica II | 190 | 65.26% | 34.74% |
| Indica Intermediate | 199 | 85.93% | 14.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122468295 | A->G | LOC_Os01g39830(LOC_Os01g39830.1) | INTRON |