Detailed information of SNP:
|
SNP ID:
sf0122499325(Gbrowse)
Chromosome: chr01 Position: 22499325 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.57% | 5.43% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122499325 | T->A | LOC_Os01g39890(LOC_Os01g39890.1) | Non-Synonymous SNP |