Detailed information of SNP:
|
SNP ID:
sf0122530567(Gbrowse)
Chromosome: chr01 Position: 22530567 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.72% | 39.28% |
| All Indica | 798 | 77.94% | 22.06% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122530567 | A->G | INTERGENIC | None |