Detailed information of SNP:
|
SNP ID:
sf0122531514(Gbrowse)
Chromosome: chr01 Position: 22531514 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 51.20% | 48.80% |
| All Indica | 793 | 25.35% | 74.65% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 5.61% | 94.39% |
| Indica II | 210 | 41.90% | 58.10% |
| Indica Intermediate | 209 | 44.02% | 55.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122531514 | C->T | INTERGENIC | None |