Detailed information of SNP:
|
SNP ID:
sf0122561169(Gbrowse)
Chromosome: chr01 Position: 22561169 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 91.52% | 8.48% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 450 | 76.22% | 23.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 296 | 67.57% | 32.43% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 81.97% | 18.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122561169 | A->G | INTERGENIC | None |