Detailed information of SNP:
|
SNP ID:
sf0122563525(Gbrowse)
Chromosome: chr01 Position: 22563525 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 60.58% | 39.42% |
| All Indica | 736 | 36.96% | 63.04% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 334 | 16.17% | 83.83% |
| Indica II | 201 | 51.74% | 48.26% |
| Indica Intermediate | 201 | 56.72% | 43.28% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122563525 | A->G | INTERGENIC | None |