Detailed information of SNP:
|
SNP ID:
sf0122579877(Gbrowse)
Chromosome: chr01 Position: 22579877 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1241 | 57.45% | 42.55% |
| All Indica | 627 | 17.54% | 82.46% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 354 | 6.21% | 93.79% |
| Indica II | 138 | 18.84% | 81.16% |
| Indica Intermediate | 135 | 45.93% | 54.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122579877 | G->A | LOC_Os01g40030(LOC_Os01g40030.1) | INTRON |