Detailed information of SNP:
|
SNP ID:
sf0122601508(Gbrowse)
Chromosome: chr01 Position: 22601508 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.85% | 46.15% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122601508 | G->A | INTERGENIC | None |