Detailed information of SNP:
|
SNP ID:
sf0122635248(Gbrowse)
Chromosome: chr01 Position: 22635248 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.83% | 48.17% |
| All Indica | 799 | 80.23% | 19.77% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122635248 | A->C | LOC_Os01g40120(LOC_Os01g40120.1) | INTRON |