Detailed information of SNP:
|
SNP ID:
sf0122646912(Gbrowse)
Chromosome: chr01 Position: 22646912 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 94.63% | 5.37% |
| All Indica | 795 | 93.08% | 6.92% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122646912 | T->C | LOC_Os01g40150(LOC_Os01g40150.1) | INTRON |