Detailed information of SNP:
|
SNP ID:
sf0122662172(Gbrowse)
Chromosome: chr01 Position: 22662172 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.27% | 45.73% |
| All Indica | 798 | 84.46% | 15.54% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122662172 | A->G | LOC_Os01g40170(LOC_Os01g40170.1) | Non-Synonymous SNP |